PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005349m
Common NameCARUB_v10005349mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 303aa    MW: 33898.8 Da    PI: 7.8469
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005349mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.7e-30168226158
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                      ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaedp++++ tYeg+Hnh
  Carubv10005349m 168 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDPSLLVATYEGTHNH 226
                      58***************************99**************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-29159227IPR003657WRKY domain
SuperFamilySSF1182903.92E-25164227IPR003657WRKY domain
SMARTSM007746.1E-34168228IPR003657WRKY domain
PfamPF031062.0E-24169226IPR003657WRKY domain
PROSITE profilePS5081125.935170229IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDCSSFLDLN TNPFPEMLPK KEASVSASTH FKRKWLEQDE SASELREELN RVNSENKKLN  60
EMLATVHENY CALRHQLEKL QSRQSPEISQ TEQPIKKRKQ DPDEFLGFPI GLSSGKTENS  120
SSNDDQQQQY EQKNQLISCK RPVTDSFNKA KVSTVYVPTD TSDTSLTVKD GYQWRKYGQK  180
VTRDNPSPRA YFRCSFAPSC PVKKKVQRSA EDPSLLVATY EGTHNHLGPN ASECDATSQG  240
GSSTVTLDLV HGSHRLALEK NERNTMQDVL VQQMASSLTK DSKFTAALAA AISGRLMEQS  300
RT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-201612261174Probable WRKY transcription factor 4
2lex_A3e-201612261174Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00465DAPTransfer from AT4G31800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4284210.0AF428421.1 Arabidopsis thaliana AT4g31800/F28M20_10 mRNA, complete cds.
GenBankAK2274010.0AK227401.1 Arabidopsis thaliana mRNA for WRKY like transcription factor, complete cds, clone: RAFL14-06-B12.
GenBankAY1255570.0AY125557.1 Arabidopsis thaliana AT4g31800/F28M20_10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284195.10.0hypothetical protein CARUB_v10005349mg
SwissprotQ9C5T40.0WRK18_ARATH; WRKY transcription factor 18
TrEMBLR0H0X10.0R0H0X1_9BRAS; Uncharacterized protein
STRINGAT4G31800.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65841945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.10.0WRKY DNA-binding protein 18